Instruments/Zeiss-Elyra-7.md

@@ -4,11 +4,18 @@
 
 # Manuals & Guides
 
-## Startup & Shutdown Guide
+## Startup
 
-## Sample Preparation
+## Environmental Control
+[Zeiss_Elyra_Environmental_controls_01.pdf](uploads/9e4a1088f421fd1742a2dd0076f3a89a/Zeiss_Elyra_Environmental_controls_01.pdf)
 
-## Colocalization Analysis
+## Setting up Lattice SIM
+[Zeiss_Elyra_Setting_up_Lattice_SIM.pdf](uploads/8a812e218450d11bab8caa13642c6510/Zeiss_Elyra_Setting_up_Lattice_SIM.pdf)
+
+## Setting up TIRF
+[Zeiss_Elyra_Setting_up_TIRF_imaging.pdf](uploads/d5abb8b971c53cbf7a21b318be59d1c3/Zeiss_Elyra_Setting_up_TIRF_imaging.pdf)
+
+## Dual-Camera Alignment & Colocalization Analysis
 
 Camera Alignment has to be done before EACH experiment using both cameras and for each filter in the camera link and for each objective individually.** It has to be done again if the camera was pushed by accident, or if the cover of the camera link has been opened.
 
@@ -83,8 +90,17 @@ Use a yellow marker pen slide with a coverslip and a slide with beads (100nm Tet
 4. Choose the input image, activate Fit and Affine, Click apply
 5. Save the results in order to correct your images later on.
 
-## User Manual
+## Shutdown
 
-# Technical Specifications
+# Data Processing
+
+## Data Handling and Transfer
+[Zeiss_Elyra_Data_handling_and_transfer.pdf](uploads/05626bace59dedf1f98c81eb92659ac5/Zeiss_Elyra_Data_handling_and_transfer.pdf)
 
+## SIM Processing Guide
+[Zeiss_Elyra_Data_processing_manual.pdf](uploads/7eb4ca92b4533de12263da4abbd6c330/Zeiss_Elyra_Data_processing_manual.pdf)
+
+
+# Technical Specifications
+[Configuration_Elyra.pdf](uploads/86be8a7457b9836c575026687c4b68c2/Configuration_Elyra.pdf)
 ## Objectives
\ No newline at end of file